miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|238217171|gb|GR092462.1|GR092462 CACAGCAGCAGACTAATTTTTCATTTCTTTTTTTCCTACTCCAGAAAATACCCCATTACAAAAAGAAAAAAAAAAGATAT
ACCATTAAACAAAAGGAAGGGAAACTATTTATCATCATAAAAGGGTAAACATAGTTGCGAGGGGATGGATTACATAATTT
CATAAGCTTCCATTTTTCATCTTCACTCGTCGTCGTCGTCATCATCATCATCGGCGCTGCCGTCCTCGTCATCATCGTCG
TCTTCGTCATCGTTCACTTCCGACCTTGACTTGTCGGACTCCTCTTCTGTGGGCCCATCGCTCAATTTTTTGTTGTAAGC
CTGAAGGGTTTTTTCATACTCGCCCTTTCGCTTCTCAGCCTTGGCTATGTAAGGAGCTTTTTCAGCTTCTGTGAGAGATT
TCCACTTGTCACCACCAGCTTTCCCAACAGCGGCGACTGATTTGTTGTTTGGGTGCTTCTCTTTGTACGTTTTCCTGAAG
TCCTCCATGAAGACGAAGAAGGCACTAGCAGGCCTCTTTGGCTTGTTTGGGTCCTTAACCGGCTTTCCCTTCTTCACCAC
CGGTTTTTTCCCACCTGCTGCTCCTTTCTTCACTGCTAGCTTAGGATCAGCTTTCTTGGACTCGGTCTTCGATCTGCCTC
CTTTCATGGCTCCCCTAACAAATAATGAATGATAGATAACCTACAGAGAGAGAGAGTGATGTGGTAGTGGAGA




Most similar to sp|P40619|HMGL_IPONI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
          Length = 144

 Score =  149 bits (376), Expect = 2e-35
 Identities = 75/89 (84%), Positives = 78/89 (87%), Gaps = 1/89 (1%)
 Frame = -1

Query: 515 RPASAFFVFMEDFRKTYKEKHPNNKSVAAVGKAGGDKWKSLTEAEKAPYIAKAEKRKGEY 336
           RP SAFFVFMEDFRKTYKEKHPNNKSVA VGKAGGDKWK LT AEKAP+I+KAEKRK EY
Sbjct: 38  RPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEY 97

Query: 335 EKTLQAYNKKLSDGPT-EEESDKSRSEVN 252
           EK LQAYNKK + G   EEESDKSRSEVN
Sbjct: 98  EKNLQAYNKKQAAGAAEEEESDKSRSEVN 126